rs31180147 SNP Detail

Summary

• ID
  rs31180147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152684100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCT GGCAGGCAGT TTTAAAAGCT
  Y
  CCAGGGCAGG TTTTCAGAGC CACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49711704	NES13078929	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31180147					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711704	NES13078929	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152684100 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	Intron
Rr420547	regulatory region 420547	449 bp distal
Rr420548	regulatory region 420548	1335 bp proximal
Rr420549	regulatory region 420549	1668 bp proximal
Tssr9423	transcription start site region 9423	559 bp downstream
Tssr9424	transcription start site region 9424	523 bp downstream
Tssr9425	transcription start site region 9425	473 bp downstream
Tssr9426	transcription start site region 9426	451 bp downstream
Tssr9427	transcription start site region 9427	433 bp downstream
Tssr9428	transcription start site region 9428	415 bp downstream
Tssr9429	transcription start site region 9429	390 bp downstream
Tssr9430	transcription start site region 9430	1758 bp upstream
Tssr14234	transcription start site region 14234	36 bp upstream
Tssr14235	transcription start site region 14235	1575 bp downstream