rs31178960 SNP Detail

Summary

• ID
  rs31178960
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:96094461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAATCTT TGATTTGGGG
  ATCCCTGAGC TACCTCCAAT CACTTAATCG CCAATCTGTT CTGGCAGGAA AAGTCTTCGG
  CTTGTTGCAT AGTCATACAA ATAACCTGGG AAATGCGCCT TCTCTGTAAT ACTTAACAAT
  GAGATAAAAG AACCATTAAT CCGGACAGGG CTAAGCACCA TGTTCAGGGT TAATTCATAC
  K
  GTTATTTCAG TCTTTGCATC CCCTTTTCCC AAACAACAGA AGTAGAAGTT TGGAGGGTCT
  GGGTGACTAG CTTGAAGCCA CCCAAAGAAT GGCTACCAAT GGAGGTCGTG TCCGTGTGAT
  TCTGTCACAG GTTGGGGGGA TACCCTGTAG TACATAATAT GACTATACCA AGTAGCCTCT
  TTGAGAAGCA TTAGATATAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48024673	NES11911973	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31178960					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48024673	NES11911973	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:96094461 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2900060L22Rik	RIKEN cDNA 2900060L22 gene			Noncoding-Transcript-Variant
Cpgi17767	CpG island 17767			253 bp distal
Rr635053	regulatory region 635053			526 bp distal
Rr635054	regulatory region 635054			1089 bp distal
Rr635055	regulatory region 635055			767 bp distal
Rr635056	regulatory region 635056			28 bp distal
Rr635057	regulatory region 635057			340 bp distal
Tafa1	TAFA chemokine like family member 1			Intron
				Noncoding-Transcript-Variant
Tssr62190	transcription start site region 62190			1562 bp upstream
Tssr62191	transcription start site region 62191			476 bp upstream