rs31177917 SNP Detail

Summary

• ID
  rs31177917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:96093218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACACACC TTGCTCAAGA
  GATTGAATTG GTTTTGGACA CTAGCAAACT ATTCTACAAA AGGTGGGGGT AACTTTCAAA
  ACTAGGGGAT TGGGAGGAGA CATGTATTCC CTGGGGCGAG TTTATACCTA GTGCAGATAC
  AGTCATTTCA GACTATGTGG CTAAAGAGTC CACAGATGGC GTTAATGACC AGACTAACTT
  Y
  AGGAGTTGTC AATGAAAAAG AAAAGGAAAC AGTGACTTAC TATGTCGTGT CTGGTTTAAT
  TTGCATCCTG TCTTCACTCC CTTCCTTTCT TTACTTTTGG TTTCTCCAGT ATGTTCGGTG
  CCCCCACCCT TTTTTCCTCC CTCTGTTGGC AGTTTCAGGA ACAAGTTCGC TCTGGCATGA
  TTTTTGAAAA TTTCCTTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48024657	NES11911965	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31177917					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48024657	NES11911965	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:96093218 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2900060L22Rik	RIKEN cDNA 2900060L22 gene			Intron
				Noncoding-Transcript-Variant
Cpgi17767	CpG island 17767			400 bp proximal
Rr635053	regulatory region 635053			within coordinates
Rr635054	regulatory region 635054			133 bp proximal
Rr635055	regulatory region 635055			455 bp proximal
Rr635056	regulatory region 635056			718 bp proximal
Rr635057	regulatory region 635057			882 bp proximal
Tafa1	TAFA chemokine like family member 1			Intron
				Noncoding-Transcript-Variant
Tssr57828	transcription start site region 57828			966 bp downstream
Tssr62190	transcription start site region 62190			319 bp upstream
Tssr62191	transcription start site region 62191			734 bp downstream