rs31177059 SNP Detail

Summary

• ID
  rs31177059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132795140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCACTCAT GCTGGGTAAG TACTCTGTCA CTGAGTTAGA
  CCTCACCCCC TACTATTCTT TAAAATGCAC AAATTCTTTA CCTAAGGACA CTATTAAAAC
  R
  CATAAACTTT AATGGGAAAA ATCCAACTCG CGCTTTTTAT TTGAAAACTT CTTCCAACAA
  AATGTGTGGA CTATGTTGAA CTTAAATGTG CTGCACCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45505877	mCV25027887	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss135916534	ENSMUSSNP4906829	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31177059					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132795140 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13847	CpG island 13847			1801 bp proximal
Gstcd	glutathione S-transferase, C-terminal domain containing			Intron
				Noncoding-Transcript-Variant
Rr398028	regulatory region 398028			1516 bp upstream
Rr585500	regulatory region 585500			1085 bp proximal