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rs31176089 SNP Detail
Summary
  • ID
    rs31176089
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr6:96091738 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACAGATAAGG AAGTCATCCT
    AGGAGGTCAC AAGCAGGTTT TCAGTGCATA GTGGAAATTC TTGAAGGGTG TCATTTGACA
    GAGGAAAGGT GCTCAACCTT GATTGCACAG CCCCTCTCTG AGACCTCAGA GAGGAAAGGC
    TGTCACTAAC TGAATTCTTA TATAGGGGGT GCTTCCTATG ACTGGCTGAC TAAGGACGAT
    S
    CTTCAAGTTT GATTAATTTG GCAATATGAA ATGCAGCATA AGGTGTTGTT TGGGAAATTG
    GACAATATGT AGCGCCGTTG AGCTTCTGTA GCTCCTGAGA TGCTCATAGG TGCAGATAAG
    ACTGTCAAAG TTTCAGTGCC TGAGAAAAGG TATATGCTCG CCCATATAAA TACACACACC
    ACCTGTATAT ACATATTCAT                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss48024639 NES11911956 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C G C C G C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs31176089 SNP C C C C C C C C C C G C C G C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss48024639 NES11911956 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:96091738 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
2900060L22Rik RIKEN cDNA 2900060L22 gene Intron
Noncoding-Transcript-Variant
Cpgi17767 CpG island 17767 1880 bp proximal
Rr635053 regulatory region 635053 1353 bp proximal
Rr635054 regulatory region 635054 1613 bp proximal
Rr635055 regulatory region 635055 1935 bp proximal
Tafa1 TAFA chemokine like family member 1 Intron
mRNA-UTR
Noncoding-Transcript-Variant
Noncoding-Transcript-Variant
Tssr57824 transcription start site region 57824 1640 bp downstream
Tssr57825 transcription start site region 57825 1630 bp downstream
Tssr57826 transcription start site region 57826 1587 bp downstream
Tssr57827 transcription start site region 57827 1305 bp downstream
Tssr57828 transcription start site region 57828 492 bp upstream
Tssr62190 transcription start site region 62190 1157 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory