ACAGATAAGG AAGTCATCCT AGGAGGTCAC AAGCAGGTTT TCAGTGCATA GTGGAAATTC TTGAAGGGTG TCATTTGACA GAGGAAAGGT GCTCAACCTT GATTGCACAG CCCCTCTCTG AGACCTCAGA GAGGAAAGGC TGTCACTAAC TGAATTCTTA TATAGGGGGT GCTTCCTATG ACTGGCTGAC TAAGGACGAT S CTTCAAGTTT GATTAATTTG GCAATATGAA ATGCAGCATA AGGTGTTGTT TGGGAAATTG GACAATATGT AGCGCCGTTG AGCTTCTGTA GCTCCTGAGA TGCTCATAGG TGCAGATAAG ACTGTCAAAG TTTCAGTGCC TGAGAAAAGG TATATGCTCG CCCATATAAA TACACACACC ACCTGTATAT ACATATTCAT S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss48024639 | NES11911956 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | C | C | C | G | C | C | G | C |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs31176089 | SNP | C | C | C | C | C | C | C | C | C | C | G | C | C | G | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss48024639 | NES11911956 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr6:96091738 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
2900060L22Rik | RIKEN cDNA 2900060L22 gene | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Cpgi17767 | CpG island 17767 | 1880 bp proximal | ||||||
Rr635053 | regulatory region 635053 | 1353 bp proximal | ||||||
Rr635054 | regulatory region 635054 | 1613 bp proximal | ||||||
Rr635055 | regulatory region 635055 | 1935 bp proximal | ||||||
Tafa1 | TAFA chemokine like family member 1 | Intron | ||||||
mRNA-UTR | ||||||||
Noncoding-Transcript-Variant | ||||||||
Noncoding-Transcript-Variant | ||||||||
Tssr57824 | transcription start site region 57824 | 1640 bp downstream | ||||||
Tssr57825 | transcription start site region 57825 | 1630 bp downstream | ||||||
Tssr57826 | transcription start site region 57826 | 1587 bp downstream | ||||||
Tssr57827 | transcription start site region 57827 | 1305 bp downstream | ||||||
Tssr57828 | transcription start site region 57828 | 492 bp upstream | ||||||
Tssr62190 | transcription start site region 62190 | 1157 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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