rs31176087 SNP Detail

Summary

• ID
  rs31176087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:96091687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGTTTAT TTTTGCTGAC
  TATCACTGGC TTTGAAAGAG TATCAATTTC CACAGATAAG GAAGTCATCC TAGGAGGTCA
  CAAGCAGGTT TTCAGTGCAT AGTGGAAATT CTTGAAGGGT GTCATTTGAC AGAGGAAAGG
  TGCTCAACCT TGATTGCACA GCCCCTCTCT GAGACCTCAG AGAGGAAAGG CTGTCACTAA
  Y
  TGAATTCTTA TATAGGGGGT GCTTCCTATG ACTGGCTGAC TAAGGACGAT CCTTCAAGTT
  TGATTAATTT GGCAATATGA AATGCAGCAT AAGGTGTTGT TTGGGAAATT GGACAATATG
  TAGCGCCGTT GAGCTTCTGT AGCTCCTGAG ATGCTCATAG GTGCAGATAA GACTGTCAAA
  GTTTCAGTGC CTGAGAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48024637	NES11911955	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31176087					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48024637	NES11911955	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:96091687 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2900060L22Rik	RIKEN cDNA 2900060L22 gene			Intron
				Noncoding-Transcript-Variant
Cpgi17767	CpG island 17767			1931 bp proximal
Rr635053	regulatory region 635053			1404 bp proximal
Rr635054	regulatory region 635054			1664 bp proximal
Rr635055	regulatory region 635055			1986 bp proximal
Tafa1	TAFA chemokine like family member 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr57824	transcription start site region 57824			1589 bp downstream
Tssr57825	transcription start site region 57825			1579 bp downstream
Tssr57826	transcription start site region 57826			1536 bp downstream
Tssr57827	transcription start site region 57827			1254 bp downstream
Tssr57828	transcription start site region 57828			543 bp upstream
Tssr62190	transcription start site region 62190			1208 bp downstream