rs31175415 SNP Detail

Summary

• ID
  rs31175415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145887526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACAACTC CACTCGGCTG
  TGGCACCGCG TCTCCCTGTG AGGTGGATCT GCCAGCTCGG AATTGTTTGC TCTTGTCTTC
  TGCCTCCGGA GGTCAGTGTG ACTTGTAAGA CGTCTTTTTT ACATGTTTGC CGTAGAGATT
  TCTAAACTTC TTCCTGGAGA AGTACAAACA GCGCGTGTGT GGCGCTGACC AGTGGGAATT
  Y
  GTCAACGGAT GGTACGTCCT GGTCACTATC AGCGACCTCA TGACAATAAT TGGATCCATA
  TTGAAGATGG AAATCAAAGC CAAGGTCAGT GACATCTAGA ACCTTATATT GTCCCGGATG
  ACCTCAGGTC ATCCTGTAAG ACATGGAGTC TTTCTGGGGA ATCTTTCTGG GGACTAGCCT
  GCTTCTTGTG TTTTCTCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47025070	NES10854118	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31175415					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47025070	NES10854118	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145887526 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mcoln2	mucolipin 2			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr586956	regulatory region 586956			1957 bp distal
Rr586957	regulatory region 586957			896 bp distal
Rr586958	regulatory region 586958			476 bp distal
Rr586959	regulatory region 586959			588 bp distal
Tssr32338	transcription start site region 32338			1193 bp upstream
Tssr32339	transcription start site region 32339			1210 bp upstream