rs31175213 SNP Detail

Summary

• ID
  rs31175213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152552925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGAGGA GGAAGGAAAG
  AGGAGCAGAA GCACCTGGCC CGGAGAAACT GTAAGTTCTA AGGGGTCTCT TATATGGGGA
  AGACCATAGT GTCATGGTAG ATCTGCCCAA TCTAGGCGCA CAGCACATGT ATTCATATTA
  ACTGAGTTGT GTTTTCATTG CCTGGGCTTA TTTGGATTAG AGATTTACTG CAACAGACAT
  Y
  ATTATCCCAT AATTCCGTAA CTCATGACAA TCCGGAAGTA AGAAAGAGGC ATTGTTTTGC
  TAATTCGCAT AACAAGTAAT AAGGTCAAGT TATCTCTTCC TTAAACCTTA TTGGCTTGCT
  GGGCTAAGTT CCTCATAACA AGGGAACAAG TCTAGATTCA GCATGTATTC CAAGTGGCTA
  ATATTGTAAA ACGAAATTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss45136128	mCV24918174	ABI	CRAMUS_MOUSE	f	SNP		C	T				T		T
ss49712319	NES13064211	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T		T	T	T	T	T
ss145734364	ENSMUSSNP7054501	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs31175213					SNP	C	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49712319	NES13064211	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152552925 () rs orientation: forward

Symbol	Name	Function Class
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	Intron
Rr420515	regulatory region 420515	1673 bp distal
Rr420516	regulatory region 420516	362 bp proximal
Rr420517	regulatory region 420517	1465 bp proximal