rs31175206 SNP Detail

Summary

• ID
  rs31175206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152553354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGAATTG AGCCTATCTG
  CAAAGACAGG CCTTATGCTC ATGTGACCAG CTGCCAATAA GAGTAAGTGG AAGATGAAGT
  CAATGAGTGG GACAGGGTGA CACTAGAGAA ACTGAGACAA GTCTCTACAG AGAGAGTTTT
  CTCTTTGGGC CTCATGTGCT CCATCTGGAA GCCACAGACA GCAAGCCTGA GACTGCTTGC
  Y
  GAGGGCGGCC ATGAGCTCAG TGCCAGCCCA GGCCATCACA CAGTAGTAGA AACATGGAGC
  ACATAACAGA CTCGCATAAA AATCAGGCAA GTGCAACCTG CACAGTAAGA GTGGACAGAG
  TTCCTGAGGG GACATGCTGA CAAAGGACGT TGACACAGGC AAGGAAATAA ACAAGGCAGA
  GGCCATCGGG AGGTTTCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss49712312	NES13064219	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs31175206					SNP	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49712312	NES13064219	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152553354 () rs orientation: forward

Symbol	Name	Function Class
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	Intron
Rr420516	regulatory region 420516	within coordinates
Rr420517	regulatory region 420517	1036 bp proximal