rs31174505 SNP Detail

Summary

• ID
  rs31174505
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145885926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCCTCC AGGGTGTGTT
  GGCTTGTCTG TGGAGTGCGG TATGCTGTTG CTTCTGATGG TTGCCGCTTT AACAAGAGAA
  AGGGGTCTTT CCCTTGAATT TCCCTTCAGA CTACCATTTG CTGAAAAGAC TACTCTCCAC
  AATGTGTGCG AGGCGTACTT CCCATTTGTA CTCTGCCTTG CTCTGCAGCT CAGAGAAGCA
  S
  TCACTACCTC CTGGTGTTTG ATGTGTTCGT CATTATGATC TGCCTGGCAT CCCTTATCCT
  GTGCACGAGA TCCATTGTTC TTGCTCTGAG GCTGAGGAAG GTAAGAGAGA AACTCCCCTG
  TCTCCCTCCA CTCAGCCAAC AGCCTGCATT TGTCTAAATC AAGGGAATAA AATGGCAGCA
  TCCAGGCAGG CATGGTACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47025058	NES10854251	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31174505					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47025058	NES10854251	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145885926 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mcoln2	mucolipin 2			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr586952	regulatory region 586952			1528 bp distal
Rr586955	regulatory region 586955			1797 bp distal
Rr586956	regulatory region 586956			357 bp distal
Rr586957	regulatory region 586957			240 bp proximal
Rr586958	regulatory region 586958			901 bp proximal
Rr586959	regulatory region 586959			991 bp proximal