rs31174285 SNP Detail

Summary

• ID
  rs31174285
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151765807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CGGAGGCCAT CAACTGGGTC AAGTGTGAAG CTTACCACAC CCGGCTGGGC
  W
  GTTGTCTCTC TGGTACACCC AGGACACAGA GCGGCTCTAT AGTGGAGGAA           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45003525	mCV23125358	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	T
ss145723804	ENSMUSSNP1829432	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		T
ss320060303	CHEV_1_153737186	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31174285					SNP	A	A	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151765807 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700025G04Rik	RIKEN cDNA 1700025G04 gene			Intron
				mRNA-UTR
D1Mit513	DNA Segment, Chr 1, Massachusetts Institute of Technology 513			1770 bp proximal
Rr420378	regulatory region 420378			1997 bp distal
Rr420379	regulatory region 420379			within coordinates
Rr420380	regulatory region 420380			1107 bp proximal