rs31173952 SNP Detail

Summary

• ID
  rs31173952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152665297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTCCCCCT catacccacc ccatacccac
  cccataccca TCTGGCACCC ACCCCAGTCG AGTTCCTGAC CTCAGGAGCT CCCAACCTTC
  TCTACTCCAG CTGCAGAGGT CATGCTGACT CCCAGATGTA CAGAGGAAAC AGCAGCTCTT
  R
  TACAGCATCA GTGGAAGAAC TTCAGTCATT TAGGGCAGGG TCAGAGTTTA CTGACATCTC
  TATAAGCCAC ATCATCCCCT TCCCTAGCTA CAGTATCATC ATTCATGAGA GAGCTTCATG
  TTGGTGTGTT GTTGTTGTGT GTTGGTTGGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49711838	NES13061074	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	G	A	A	G		G	A	G	G		G
ss320068143	CHEV_1_154636676	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31173952					SNP	A	A	G	A	G	A	G	A	A	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711838	NES13061074	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152665297 () rs orientation: forward

Symbol	Name	Function Class
Rr420541	regulatory region 420541	687 bp proximal
Rr420542	regulatory region 420542	790 bp proximal
Rr420543	regulatory region 420543	914 bp proximal