rs31173951 SNP Detail

Summary

• ID
  rs31173951
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152665353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCATACC CACCCCATAC
  CCACCCCATA CCCATCTGGC ACCCACCCCA GTCGAGTTCC TGACCTCAGG AGCTCCCAAC
  CTTCTCTACT CCAGCTGCAG AGGTCATGCT GACTCCCAGA TGTACAGAGG AAACAGCAGC
  TCTTATACAG CATCAGTGGA AGAACTTCAG TCATTTAGGG CAGGGTCAGA GTTTACTGAC
  R
  TCTCTATAAG CCACATCATC CCCTTCCCTA GCTACAGTAT CATCATTCAT GAGAGAGCTT
  CATGTTGGTG TGTTGTTGTT GTGTGTTGGT TGGTAGCTTG GATGTTGGTT GCTTTGTGGT
  GTTGTTTTAA TGGGGGGGAG GGCAGGGAGA GACAGAGACA CAGAGACAGA GAGAGAAGGG
  GTCTGGAAAT CAGAGGATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49711837	NES13061075	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31173951					SNP	A	A	A	G	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711837	NES13061075	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152665353 () rs orientation: forward

Symbol	Name	Function Class
Rr420541	regulatory region 420541	631 bp proximal
Rr420542	regulatory region 420542	734 bp proximal
Rr420543	regulatory region 420543	858 bp proximal