rs31173950 SNP Detail

Summary

• ID
  rs31173950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152665416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCAGATGT ACAGAGGAAA CAGCAGCTCT
  TATACAGCAT CAGTGGAAGA ACTTCAGTCA TTTAGGGCAG GGTCAGAGTT TACTGACATC
  TCTATAAGCC ACATCATCCC CTTCCCTAGC TACAGTATCA TCATTCATGA GAGAGCTTCA
  Y
  GTTGGTGTGT TGTTGTTGTG TGTTGGTTGG TAGCTTGGAT GTTGGTTGCT TTGTGGTGTT
  GTTTTAATGG GGGGGAGGGC AGGGAGAGAC AGAGACACAG AGACAGAGAG AGAAGGGgtc
  tggaaatcag aggataacct agaatgtcga                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49711836	NES13061076	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	C	T	T	C		C	T	C	C		T
ss320068144	CHEV_1_154636795	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31173950					SNP	T	T	C	T	C	T	C	T	T	C	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711836	NES13061076	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152665416 () rs orientation: forward

Symbol	Name	Function Class
Rr420541	regulatory region 420541	568 bp proximal
Rr420542	regulatory region 420542	671 bp proximal
Rr420543	regulatory region 420543	795 bp proximal