rs31173878 SNP Detail

Summary

• ID
  rs31173878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82051052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTCTATT CCACTCTATG
  GAGGAACAAA TGTGTAACTA CCCAGCATGC ACACATCCCG CATGATCTTC ATCCATTCAC
  TTGTTGCTAG GCACTGGAAC GGCTCCATAT CTTGGCTACT GGGTCTAGTA ATTATCTCAG
  CAGTGGGCTG ACACAAACTC TTTCCTGTAT ATACCTGAAG GAGTAGAGCT CAATCATGTG
  R
  TATTTCTATT TTTAGGTATG TTGAGGAACC TCCATTCTGA CATCCACAGT AGCTTCCCAA
  GTTTACATTT TCCCAGGTAG TGTATACAGT TTCCTCACCC TCCTGCTCCT CACCAGCATT
  TGAAATGTTT AGCTATTGTA TGTAGCACAA CCCTTGAAGT CTTCTGCTAG TCTGCATCCA
  CACCCTTTTG TACAGAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45505836	mCV24169935	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss135401141	ENSMUSSNP958167	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31173878					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82051052 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13288	CpG island 13288			1127 bp proximal
Gucy1a1	guanylate cyclase 1, soluble, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr578750	regulatory region 578750			889 bp proximal
Rr578751	regulatory region 578751			1318 bp proximal
Tssr33784	transcription start site region 33784			1993 bp downstream