rs31173703 SNP Detail

Summary

• ID
  rs31173703
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145885904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGGGGTCT TTCCCTTGAA TTTCCCTTCA GACTACCATT
  TGCTGAAAAG ACTACTCTCC ACAATGTGTG CGAGGCGTAC TTCCCATTTG TACTCTGCCT
  Y
  GCTCTGCAGC TCAGAGAAGC ACTCACTACC TCCTGGTGTT TGATGTGTTC GTCATTATGA
  TCTGCCTGGC ATCCCTTATC CTGTGCACGA GATCCATTGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47025056	NES10854250	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31173703					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47025056	NES10854250	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145885904 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mcoln2	mucolipin 2			Intron
				Noncoding-Transcript-Variant
Rr586952	regulatory region 586952			1506 bp distal
Rr586955	regulatory region 586955			1775 bp distal
Rr586956	regulatory region 586956			335 bp distal
Rr586957	regulatory region 586957			262 bp proximal
Rr586958	regulatory region 586958			923 bp proximal
Rr586959	regulatory region 586959			1013 bp proximal