rs31173699 SNP Detail

Summary

• ID
  rs31173699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145885838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTCTGTT GGATTCTGTT
  CTGCAGTAAA TATTTATAAA GAGCTTAAGT GCGTTGATTA ACACCGCCTA CGTTTGTAAG
  TGCACGGCCC TTCCCTCCAG GGTGTGTTGG CTTGTCTGTG GAGTGCGGTA TGCTGTTGCT
  TCTGATGGTT GCCGCTTTAA CAAGAGAAAG GGGTCTTTCC CTTGAATTTC CCTTCAGACT
  R
  CCATTTGCTG AAAAGACTAC TCTCCACAAT GTGTGCGAGG CGTACTTCCC ATTTGTACTC
  TGCCTTGCTC TGCAGCTCAG AGAAGCACTC ACTACCTCCT GGTGTTTGAT GTGTTCGTCA
  TTATGATCTG CCTGGCATCC CTTATCCTGT GCACGAGATC CATTGTTCTT GCTCTGAGGC
  TGAGGAAGGT AAGAGAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss47025052	NES10854248	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs31173699					SNP	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47025052	NES10854248	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145885838 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mcoln2	mucolipin 2			Intron
				Noncoding-Transcript-Variant
Rr398114	regulatory region 398114			1965 bp downstream
Rr586952	regulatory region 586952			1440 bp distal
Rr586954	regulatory region 586954			1976 bp distal
Rr586955	regulatory region 586955			1709 bp distal
Rr586956	regulatory region 586956			269 bp distal
Rr586957	regulatory region 586957			328 bp proximal
Rr586958	regulatory region 586958			989 bp proximal
Rr586959	regulatory region 586959			1079 bp proximal