rs31173696 SNP Detail

Summary

• ID
  rs31173696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145885702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGCACA AGTGGGACCT
  CTCAGTGTGG CATTTAACTT TGCTCTCTTA ATTGATAAGG GGAACTCATT GTCTGTGTTG
  CTGTGTGAAG CAACGCAGGC CATGGTGGCC TCTTCTGAAT GGAGCCCAAC GGGATTGCAT
  TCTGTTGGAT TCTGTTCTGC AGTAAATATT TATAAAGAGC TTAAGTGCGT TGATTAACAC
  Y
  GCCTACGTTT GTAAGTGCAC GGCCCTTCCC TCCAGGGTGT GTTGGCTTGT CTGTGGAGTG
  CGGTATGCTG TTGCTTCTGA TGGTTGCCGC TTTAACAAGA GAAAGGGGTC TTTCCCTTGA
  ATTTCCCTTC AGACTACCAT TTGCTGAAAA GACTACTCTC CACAATGTGT GCGAGGCGTA
  CTTCCCATTT GTACTCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47025048	NES10854246	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31173696					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47025048	NES10854246	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145885702 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mcoln2	mucolipin 2			Intron
				Noncoding-Transcript-Variant
Rr398114	regulatory region 398114			1829 bp downstream
Rr586952	regulatory region 586952			1304 bp distal
Rr586954	regulatory region 586954			1840 bp distal
Rr586955	regulatory region 586955			1573 bp distal
Rr586956	regulatory region 586956			133 bp distal
Rr586957	regulatory region 586957			464 bp proximal
Rr586958	regulatory region 586958			1125 bp proximal
Rr586959	regulatory region 586959			1215 bp proximal