rs31173430 SNP Detail

Summary

• ID
  rs31173430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152632903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGATGGT TTTTTTTTTC
  CTACTTCTTT AGAGACCAAA TACTGGATTG AATCTGGGGA AAGCTGTGCA CTTTGGAGTG
  GCCAGGGACC TGGATATGTT GTGTGGTGAT TGATGGTTGT CGGGGGAGGT CTTGAACTTT
  AAGGCGGTGC TATTCCCTCC TCAGGTCTCA GCTTCCTTCT AACGCTTCTG CTTCCATAAT
  R
  ATGCTTCCTG GCTCTGACGT CTTAAAGGGT TAGTGCAGAA GAAACCATTT TGGCTATTTT
  AGCAGAGAGT TCAGTGTTTG ACGAGTCAGG TGATTTCTGG TCTTTGCTTT AGTGACAGCT
  CTCCTCAGAC CCTCAGCTTC ATCTGGTAAG AAGTGACCGG ATGGATTTGG GAATGCTTAT
  TGTTGAGCAT GGGAGAAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45505438	mCV22358364	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss136104930	ENSMUSSNP6501722	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss321029236	CHEV_3_152590230	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31173430					SNP	G	G	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152632903 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm46830	predicted gene, 46830	within coordinates
Gm66995	predicted gene, 66995	1628 bp upstream
Rr587626	regulatory region 587626	720 bp distal
Rr587627	regulatory region 587627	1184 bp proximal
Rr587628	regulatory region 587628	1639 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32427	transcription start site region 32427	1623 bp upstream