rs31172730 SNP Detail

Summary

• ID
  rs31172730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145885415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCAGGAA CAGAGACAAG
  GGAGACCGAT CCAGTCATAG TGAGGCCGGG GAGAGCAGCA GCCACAATGT GGGGCCATGT
  AGTCTAAGAG CAGCTACACT TACAGATCAG CCTCTCTTGT CCCGTCCCCC CCGCAACCCC
  CACCCCCGCA CTGTACGTTC CAAACACTCA TTCGCTCGCT CGCTCACTCA CTCACTCACT
  Y
  CTCAGTCCCT GAGTTCCTTT CTTGGTGTTG ACACACAGGA AAGGCATCTC AGACTGGCTT
  CTGGCAGGAC GGTGTACCTT GAAACAGAGG AGCACAAGTG GGACCTCTCA GTGTGGCATT
  TAACTTTGCT CTCTTAATTG ATAAGGGGAA CTCATTGTCT GTGTTGCTGT GTGAAGCAAC
  GCAGGCCATG GTGGCCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss47025042	NES10854243	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs31172730					SNP	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47025042	NES10854243	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145885415 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mcoln2	mucolipin 2			Intron
				Noncoding-Transcript-Variant
Rr398114	regulatory region 398114			1542 bp downstream
Rr586952	regulatory region 586952			1017 bp distal
Rr586953	regulatory region 586953			1779 bp distal
Rr586954	regulatory region 586954			1553 bp distal
Rr586955	regulatory region 586955			1286 bp distal
Rr586956	regulatory region 586956			within coordinates
Rr586957	regulatory region 586957			751 bp proximal
Rr586958	regulatory region 586958			1412 bp proximal
Rr586959	regulatory region 586959			1502 bp proximal