rs31172727 SNP Detail

Summary

• ID
  rs31172727
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145885232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGAGAGG ACAGGGCATG
  AGGTTAGAGT ACGTTATATA AACATATCAA GCTGTCAAGC AGCAGAATTA ATCAATAAAA
  AGAAAAATCT GAAACTTGAC CCCTAAAACA AATCATGTGA GCAGGTGTGT GTGAAGTACG
  GCTCTGGCCA AATGCAAGTG TGTGTGGCTT GTGGATGGTC CCCTAGGCAG GAACAGAGAC
  W
  AGGGAGACCG ATCCAGTCAT AGTGAGGCCG GGGAGAGCAG CAGCCACAAT GTGGGGCCAT
  GTAGTCTAAG AGCAGCTACA CTTACAGATC AGCCTCTCTT GTCCCGTCCC CCCCGCAACC
  CCCACCCCCG CACTGTACGT TCCAAACACT CATTCGCTCG CTCGCTCACT CACTCACTCA
  CTCCTCAGTC CCTGAGTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47025038	NES10854241	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31172727					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47025038	NES10854241	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145885232 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mcoln2	mucolipin 2			Intron
				Noncoding-Transcript-Variant
Rr398114	regulatory region 398114			1359 bp downstream
Rr586952	regulatory region 586952			834 bp distal
Rr586953	regulatory region 586953			1596 bp distal
Rr586954	regulatory region 586954			1370 bp distal
Rr586955	regulatory region 586955			1103 bp distal
Rr586956	regulatory region 586956			50 bp proximal
Rr586957	regulatory region 586957			934 bp proximal
Rr586958	regulatory region 586958			1595 bp proximal
Rr586959	regulatory region 586959			1685 bp proximal