rs31168336 SNP Detail

Summary

• ID
  rs31168336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100937776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACCTAGAAGA CAAAATCACA TCCCTGAGGA CACTGCCTCA GACTCTGCGA TCTGGTACAG
  CACAGACCTA GGCAGATTAG GAATAATTTA GTCTGTTTCA GGGCACAGTA ACAGGCAGAT
  TCTTGCTTGT TCTGTCCATC CATCTATCCA TCTACCATTC ATCCATTTAT CCATGCATTC
  ATCCATTCAC CATCCATCCA TTCACCCACC CACTCCATCC ACCCAAATAT CCATCCATCC
  ATTCACCCAC CCACCCCAGC CATCTATCCA TCCATCCATC CATCCATCCA TCCATCCCAT
  Y
  CATACATACA TACATACATA CATACATACA TACATACATA CATACAGTCT TTTTTTTTTT
  GTCGTCCCAT GTCTGGTGTT GTGGTACAAC TTGCACATAT ACAAAGATAT TCATAACCTT
  TCCTTTATCC TCAGGAAATG CCTTTTTAAT CAGATGACCA CCAATACAAT GTGTTTACAT
  ACTATGGGAC ATATAAAGGC AGAGAAAGAA GTTGGTGCAC AGGAGGGGAG GTCAGGATGG
  ATTGTACTGG GCCAAAGAGA CAACTAGAGG GAAAAAAAAA AGAAGCGCAT CAGGCACAGT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45505487	mCV24922638	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31168336					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100937776 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	904 bp upstream
Gm66113	predicted gene, 66113	1290 bp upstream
Rr375455	regulatory region 375455	678 bp upstream
Rr581945	regulatory region 581945	643 bp distal
Rr581946	regulatory region 581946	1109 bp proximal
Tssr34767	transcription start site region 34767	927 bp upstream
Tssr34768	transcription start site region 34768	902 bp upstream