rs31162761 SNP Detail

Summary

• ID
  rs31162761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:144509070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCACAGT GATTAGTCAC
  ATAGTAAGTT AAAATGAAAA TTGATGCTGT TTGTGCTCAT TGATGATAAG AGTTTGTCAG
  AGAGTAGACA GCATAGCTTA AACACTAGGT CACACTGTTT TGATACAAAG CCTGGCTTGA
  CTATGTAGTA ATGCTATTTT TACAAAATGT AACTTGTAGT AGGCATTTAG TTAACATTAA
  Y
  AGTTATTTTT ATTTCACAAC AGAAATGTAT CTCAAAACTA CTAGAACAGA CAAAAACATT
  TAGCAAAGAA GCAAGATATA AAACCAATGT ACAAAAATTA TTCGCCAACT TTTTTGTGAT
  GATAATATTT TATAACCAAT GAATGCGAGA TTATTACTGA TTTAAAAGTC AGTAGCTTCA
  TCACACACCA ATAATGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47022884	NES10864138	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31162761					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47022884	NES10864138	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144509070 () rs orientation: forward

Symbol	Name	Function Class
Clca3a2	chloride channel accessory 3A2	Intron
Rr586737	regulatory region 586737	1464 bp distal
Rr586738	regulatory region 586738	1138 bp distal
Rr586739	regulatory region 586739	1233 bp distal