CTCGTATTTC ACTCAGCTTT AGCACTTACC ACAGGGTTTG TTCCACAAGG TCAGGAAATG TATTTTTCAG TGGAAATGAA ACAAACAGGA AGATTGTAAC AAATTTTGTG GAAATGTCAT TTATGCTGGG CCCATTGACA TGAATATTGT TTTAAATTAC AAGGTTGACT CCATAATTAT ATAGTTGGGT GGGTGTGACT M TCTATTCAGT GTTTGATCTA TGTATGTATG TATGTATGTA TGTATGTATG TATGTATGTA TGTGTATCTG TCTGTCTATC TATCTGTCTG TCTGTCTGTC TGCAGGTAAG CCATATCTGG TTTAATGCTA CTCACCATTT TCCACATAGC CAGGTATATA TAAAGACTTG TTCTTCTGTC TTAAGCTTAG TCTGGCTTTG M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47022872 | NES10864132 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | A | C | C | C | A | C | C | C | C |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs31162009 | SNP | C | C | C | C | C | C | A | C | C | C | A | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47022872 | NES10864132 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr3:144508557 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Clca3a2 | chloride channel accessory 3A2 | Intron | ||||||
Rr586737 | regulatory region 586737 | 951 bp distal | ||||||
Rr586738 | regulatory region 586738 | 625 bp distal | ||||||
Rr586739 | regulatory region 586739 | 720 bp distal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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