rs31162009 SNP Detail

Summary

• ID
  rs31162009
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:144508557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGTATTTC ACTCAGCTTT
  AGCACTTACC ACAGGGTTTG TTCCACAAGG TCAGGAAATG TATTTTTCAG TGGAAATGAA
  ACAAACAGGA AGATTGTAAC AAATTTTGTG GAAATGTCAT TTATGCTGGG CCCATTGACA
  TGAATATTGT TTTAAATTAC AAGGTTGACT CCATAATTAT ATAGTTGGGT GGGTGTGACT
  M
  TCTATTCAGT GTTTGATCTA TGTATGTATG TATGTATGTA TGTATGTATG TATGTATGTA
  TGTGTATCTG TCTGTCTATC TATCTGTCTG TCTGTCTGTC TGCAGGTAAG CCATATCTGG
  TTTAATGCTA CTCACCATTT TCCACATAGC CAGGTATATA TAAAGACTTG TTCTTCTGTC
  TTAAGCTTAG TCTGGCTTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47022872	NES10864132	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31162009					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47022872	NES10864132	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144508557 () rs orientation: forward

Symbol	Name	Function Class
Clca3a2	chloride channel accessory 3A2	Intron
Rr586737	regulatory region 586737	951 bp distal
Rr586738	regulatory region 586738	625 bp distal
Rr586739	regulatory region 586739	720 bp distal