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rs31162009 SNP Detail
Summary
  • ID
    rs31162009
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr3:144508557 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCGTATTTC ACTCAGCTTT
    AGCACTTACC ACAGGGTTTG TTCCACAAGG TCAGGAAATG TATTTTTCAG TGGAAATGAA
    ACAAACAGGA AGATTGTAAC AAATTTTGTG GAAATGTCAT TTATGCTGGG CCCATTGACA
    TGAATATTGT TTTAAATTAC AAGGTTGACT CCATAATTAT ATAGTTGGGT GGGTGTGACT
    M
    TCTATTCAGT GTTTGATCTA TGTATGTATG TATGTATGTA TGTATGTATG TATGTATGTA
    TGTGTATCTG TCTGTCTATC TATCTGTCTG TCTGTCTGTC TGCAGGTAAG CCATATCTGG
    TTTAATGCTA CTCACCATTT TCCACATAGC CAGGTATATA TAAAGACTTG TTCTTCTGTC
    TTAAGCTTAG TCTGGCTTTG                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss47022872 NES10864132 PERLEGEN MM_PANEL2 f SNP C C C C C C A C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs31162009 SNP C C C C C C A C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47022872 NES10864132 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:144508557 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Clca3a2 chloride channel accessory 3A2 Intron
Rr586737 regulatory region 586737 951 bp distal
Rr586738 regulatory region 586738 625 bp distal
Rr586739 regulatory region 586739 720 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory