rs31161006 SNP Detail

Summary

• ID
  rs31161006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:144507879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTAAATT CGCCATTAGA
  CTCACCTCTT CCCTTATCGA GAACCTTGCC AGGGGCCGTC CATGTAAGTT GAATATAATC
  ACCTATAAAC TCAGCCTCCA GGTCTGTGAC TTTACTTGGT GGGAACACAC GAGCATGGTC
  GCCATCAGGG GGCGCTCCAG ACACAGTAAA TGACCCTCCA GAGGTTACTC TGTTGAAGTC
  Y
  TCCACTGTAG CTTCTATGGC TTCTTCTTGG ACATCTGGTC TGGGTGGATT CAGTACAATT
  TTACCTATAA AAAAAAACAC CCCCAGGCAT TTGTGACTCT CGTCTTGTCT GTTTTTTATC
  TCGTGCTGAC CTTACATCTG CTCAGGGCTC AGGTAAATTG ACAGCAGACA CTGAAAAGTG
  GAAGAAAGGA CTGGATAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47022858	NES10864176	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31161006					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47022858	NES10864176	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144507879 () rs orientation: forward

Symbol	Name	Function Class
Clca3a2	chloride channel accessory 3A2	Coding-Synonymous
Rr586737	regulatory region 586737	273 bp distal
Rr586738	regulatory region 586738	within coordinates
Rr586739	regulatory region 586739	42 bp distal