rs31159313 SNP Detail

Summary

• ID
  rs31159313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:144506840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAATGCAT AAAAATGTTT
  AGCTCTACTA ATAAGTATTA AGTCCTAGTT AGTGGCTGTC TGAAATGCTT TTTTAAAAAA
  CTATTATTTT ATCAGGAAAG GAAAGGAGGA GTCTTATATG AGTGTTGACT CACAGGCTGA
  TACTGACGTT AGTAATCTAC CTCAGTCATT TATATTGATA AGAAAATATC TTCTTATATC
  Y
  TTACATGTGA AAGGAAAACA TCTAATGTCC TCTTTTGGTG TGGGTGTGGA CATTTTTTTT
  ATAAGTTTGT TTATTTGTTA CCTATATGTG GTGCTCGGAA TTGAACTGAG GGCCTATGCA
  TGCCAGGCGA GCACTGGACT CCATCCTATC CACATGGGTT TGTTTTTTAA CGTTTTCAGG
  AAAGGTGAAA ATGTTTTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ
ss47022844	NES10864168	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ
rs31159313					SNP	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47022844	NES10864168	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144506840 () rs orientation: forward

Symbol	Name	Function Class
Clca3a2	chloride channel accessory 3A2	Intron
Rr586737	regulatory region 586737	745 bp proximal
Rr586738	regulatory region 586738	901 bp proximal
Rr586739	regulatory region 586739	976 bp proximal