ATAAATGCAT AAAAATGTTT AGCTCTACTA ATAAGTATTA AGTCCTAGTT AGTGGCTGTC TGAAATGCTT TTTTAAAAAA CTATTATTTT ATCAGGAAAG GAAAGGAGGA GTCTTATATG AGTGTTGACT CACAGGCTGA TACTGACGTT AGTAATCTAC CTCAGTCATT TATATTGATA AGAAAATATC TTCTTATATC Y TTACATGTGA AAGGAAAACA TCTAATGTCC TCTTTTGGTG TGGGTGTGGA CATTTTTTTT ATAAGTTTGT TTATTTGTTA CCTATATGTG GTGCTCGGAA TTGAACTGAG GGCCTATGCA TGCCAGGCGA GCACTGGACT CCATCCTATC CACATGGGTT TGTTTTTTAA CGTTTTCAGG AAAGGTGAAA ATGTTTTAGA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47022844 | NES10864168 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | T | C | C | C |
SNP Consensus Information | ||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
PWD/PhJ |
||||
rs31159313 | SNP | C | C | C | T | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47022844 | NES10864168 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr3:144506840 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Clca3a2 | chloride channel accessory 3A2 | Intron | ||||||
Rr586737 | regulatory region 586737 | 745 bp proximal | ||||||
Rr586738 | regulatory region 586738 | 901 bp proximal | ||||||
Rr586739 | regulatory region 586739 | 976 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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