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rs31159307 SNP Detail
Summary
  • ID
    rs31159307
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:144505873 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCAGGTTTCT ATTGAGAAAA
    AACAATGGAA TTCAGTTTTA TATTAGAGCA GGGAACACAT AATATTCATG TTCAGTAAAG
    ACCATAAGTG TCCTCTGTGA CTTTTTATCA AGTTCAGGGA AGGAGCAATG TGGGAGCAGT
    CAGAGACAGG ACCTAGGAGG ATGACAGATA AGGAGGTGTC AAAGGTCACA GAAGTAGGAA
    R
    AACACTAACT AAACATGTGC TGAGGAGCTA GTCATGTGCT AGGCTAGGCT TCACTAGCCC
    TTAATTCTAT GTTACTGTGC TTCTTTAGAG TTTATTTTAA TACTTTATTT TATTATGTGT
    GTGGGTGTTT TGCCTGCCTG CATGTCTGAG CACCATGTGC ATGTCTGGTG TAAAGGACCA
    GAAGAGAGTC CCTTGAAGAT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss47022838 NES10864183 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs31159307 SNP G G G G G G A G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47022838 NES10864183 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:144505873 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Clca3a2 chloride channel accessory 3A2 Intron
Rr586737 regulatory region 586737 1712 bp proximal
Rr586738 regulatory region 586738 1868 bp proximal
Rr586739 regulatory region 586739 1943 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory