rs31157804 SNP Detail

Summary

• ID
  rs31157804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:95687005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTGCCAA CGTTGGCTCT
  CCTTCCACCC TGTGGGTCTT AGAGGTCAAG CTCAGGCCAT CAAGCTTGGC ATGGAGAAGG
  CACCTCCCCA CCACCCCATT GCTCTCCTTC TTTAATAACA CCAATCTTTC TTTCCTATCC
  CCGTGGCCCC AGTTAGTCCA CTTTAATTAA CAGCATCCAG CTTCCCAGAG ACATCCTAGC
  Y
  TCTGCCTACT GTCACACAAT AATCACTCAC AGTGTTCTCA AGTGTCCCAG GCTGCATAAT
  AACTTTTGCC CACCCCTCCA TCTCCCATTC TATAAAGTTT GTAGATGGAG GGGACATGTC
  CATCAATTTA TGACACAAAA ATAACAAAAC ATTCAGCTTT CAGAGACACA GCAACATGAA
  AAAAAAATAG ATGAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48021321	NES11896361	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31157804					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48021321	NES11896361	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:95687005 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr635033	regulatory region 635033			275 bp distal
Rr635034	regulatory region 635034			1712 bp proximal
Suclg2	succinate-Coenzyme A ligase, GDP-forming, beta subunit			Intron
				Noncoding-Transcript-Variant