rs31157626 SNP Detail

Summary

• ID
  rs31157626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144387613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGAGCTG AGCAGAGAGG
  CTCTTTATTA GCTTCAGGCT CTCATCTAAG CCAGTACAAC AGTCTCCAGC CTACAGCACG
  GTACAAGGAT GTGGTGAGAT AACATGTGTG GAGCACTCCA GCAGTGGCTG GCACCTGGTT
  CATGCCATGG GACACAACTA CTTTCTTTTA AATGACATAC TCCTATCCTA CTAAACAGGG
  Y
  GGTGGAGTGC TCTACCGAAT ACTGAATGAA CAAACAGAGC TCTCCCAACA AACACAATCC
  CAGTAAAATC ACATAGACTT GGAGAGGCAG AGAGAACACT TTTCTATTCA GGTTGACTGT
  TGGAATGGAC CCCTTTTCTG TCTTTTGGGA ATACTGCTTG CTCATCAAGT TACTCATTAG
  TGACTGGTAT AGAGAACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47021914	NES10867408	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31157626					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47021914	NES10867408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144387613 () rs orientation: forward

Symbol	Name	Function Class
Rr586705	regulatory region 586705	within coordinates
Rr586706	regulatory region 586706	322 bp proximal
Rr586707	regulatory region 586707	968 bp proximal
Sh3glb1	SH3-domain GRB2-like B1 (endophilin)	1826 bp downstream