rs31156720 SNP Detail

Summary

• ID
  rs31156720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144387305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCCCTCAA ACACAGATGT ATTGAGGGGT TAAAGTTAGG
  GTGGGCGTAG TTTTGGTAGT TAAAGGAACA GTAGGAGTGG TCATGAAGGG AGGTCTACAG
  Y
  CATGGCAGTA TATCTGATAA CCTATGGGAA AACGAGAGGT GCTAGCATCC AGAGGAGAGG
  GAGGGATGGG AGGAACGGCT CAGGACACTG CAAGCATCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47021908	NES10867405	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T	C	C		T	C	C	T		C
ss136032801	ENSMUSSNP3882877	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				T
ss321006264	CHEV_3_144344508	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31156720					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47021908	NES10867405	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144387305 () rs orientation: forward

Symbol	Name	Function Class
Rr586705	regulatory region 586705	within coordinates
Rr586706	regulatory region 586706	630 bp proximal
Rr586707	regulatory region 586707	1276 bp proximal