rs31154970 SNP Detail

Summary

• ID
  rs31154970
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95031068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA TGTGTCTATG TATACAACCA
  Y
  GTGTCGGGTG GTGCACCTAT GCAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45505177	mCV24559499	ABI	CRAMUS_MOUSE	f	SNP		T		C		T
ss46771724	NES10667195	PERLEGEN	MM_PANEL2	f	SNP	C		C		T		T		T	T	T		T
ss135510023	ENSMUSSNP4473353	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				T
ss320841117	CHEV_3_94927679	CHEVERUD	SCREENING_POP	f	SNP								T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31154970					SNP	C	T	C	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771724	NES10667195	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95031068 () rs orientation: forward

Symbol	Name	Function Class
Rr580818	regulatory region 580818	1747 bp distal
Rr580819	regulatory region 580819	547 bp proximal
Rr580820	regulatory region 580820	769 bp proximal
Tmod4	tropomodulin 4	mRNA-UTR
Tssr967	transcription start site region 967	680 bp upstream
Tssr30490	transcription start site region 30490	1225 bp downstream
Tssr30491	transcription start site region 30491	694 bp upstream
Tssr30492	transcription start site region 30492	725 bp upstream
Vps72	vacuolar protein sorting 72	706 bp downstream