rs31153719 SNP Detail

Summary

• ID
  rs31153719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146129071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGCATG GTGGGTGGGC
  AGTCCTGTGC CCGTCTTCTG CCCCTACCCC AAGACTGTTC ATTTTCTTAG TAATACCTGC
  CAACAGGTAG TGTCCCTTGT ACTGCCTGTC CTTCCTGTAC TGAGAACCAC GCCCTTTCTC
  TCCAGTATCC TTTTGTGTCT ACCGAGTTGT CGCAGGTGCC AGGCTCCATG CCTCACCCCT
  Y
  TGCCTCTGCC ACCTCATTTC AGCAAGGGCT CGCTCAGCAG TGGAAGCGTG CTCATCTCCC
  TCTGGCTCCT GCCTGCCTAG GGACCAGTGC TCTCTGCACT GAAGCATCTC CCCCTTGACC
  CCTGGCATGA TGCTAAGTGT TGCCGTCTTT CATCTAGAGA AAGAATTAAC CCCATAAAAT
  GGCCACAGTA CAGAGAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45504482	mCV23229532	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss136044171	ENSMUSSNP203404	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss321010297	CHEV_3_146086280	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31153719					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146129071 () rs orientation: forward

Symbol	Name	Function Class
Rr587026	regulatory region 587026	577 bp proximal
Ssx2ip	SSX family member 2 interacting protein	Intron