rs31153511 SNP Detail

Summary

• ID
  rs31153511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:18912874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTGTCGT TCATCAGAGG
  ACGTTGGGAG AGCGTTCTAG AACGTTGTCA CTGGGAATAG CTTGATGTCA TCTTTAAAAT
  GCTGATACGA CTTAAAGGAT ATTTCACATC TTAGTCACAG AATCTTAAAA CCAAAGCGAG
  GCCCCGGAAT TGGTGGAATC TGTATGAAAA AGAGGGACTT CCCCCAAGGT CGCATGGTCA
  R
  GACACTGTGG TAGAGAGAGG AGGTGGGGAT TTCCTTCCTC CTTGCCGGAA CCCTCCTCTT
  CGGCCCATCT CCGCGCATCC TCATCGGCCC CAGGTTGCAG GAAAAGCAGA GAGTGGGGCT
  GGTCCCGGAC AGACCCCGAA AAGCCAGAGA GACTCTCCTG GTCTTTGGAG CGCTCCCCCG
  CACCCCTCCC GTCCCGTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss46002565	mCV25048408	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs31153511					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18912874 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eml2	echinoderm microtubule associated protein like 2			Intron
				Noncoding-Transcript-Variant
Rr643017	regulatory region 643017			1848 bp distal
Rr643018	regulatory region 643018			334 bp distal
Rr643019	regulatory region 643019			368 bp proximal
Rr643020	regulatory region 643020			1782 bp proximal
Tssr64795	transcription start site region 64795			710 bp downstream
Tssr64796	transcription start site region 64796			32 bp upstream