rs31153312 SNP Detail

Summary

• ID
  rs31153312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:95689882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCCTT CTCTCCCTCC
  CTTTCATTCC CCCCTCCCTC TCTCCTCCCC TCCTCCTCTC CCCCTCCCTT TCATTCTCCT
  TCCTTCAGTC TCCCTCTCTC CCTTCCTTCC CCCCACCTCT CCACTCCATC AGAATTATTA
  GGTACATTAA CCTACTCATT ATTCTCCTAA TCACTGCATT TATGATAAAA TAATTTTCTT
  Y
  GTAGAACTTT TTAGCAGTGG GCACACACAC AGTAAGCATT CAGAAAGTAT CTGACAAAAG
  AATGCTATTT TGTTTGGCTT TCTGTTGTGG AGCTGTGTGT GTGACCTGCC AAGTCCTGGG
  CTCTCTACAG CCCCAGCCAT CCTTCCTCCT CCGTCTAACT GATCAGCATT ATCACTGTAT
  CACTGGCTTC AGACTGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48021363	NES11896182	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31153312					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48021363	NES11896182	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:95689882 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr635034	regulatory region 635034			627 bp distal
Rr635035	regulatory region 635035			332 bp proximal
Rr635036	regulatory region 635036			376 bp proximal
Suclg2	succinate-Coenzyme A ligase, GDP-forming, beta subunit			Intron
				Noncoding-Transcript-Variant