rs31152990 SNP Detail

Summary

• ID
  rs31152990
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144366816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGAGGAA GGAGAAGGAG
  GAGGAGGAGA AGAAATAAAG AGAAGAAGGA GAAGAAGGAG AAGGAGAAGG AGGAGGAGGA
  GGAGGAGGAG GAGGAGGAGG AGGAGGAGGA GGAGAAGAAG AAGAAGAAGA AGAAGAAGAA
  GAAGAAGAAG AAGAAGAAGA AGAAGAAAGG CTCTGAGTAC TTTGTTCTTT CTCTTTCCAG
  M
  GTGCCCGACT TGTCTCTCTA TGGTGGATCA CTTTGACTCT ATAGAAGTGT GACTGTCCCT
  TCTTTCTCTC CTTTCCTAAA CTCCTTATCC TGATTCTTAA AACATGTTTA TTCTCTAGTT
  CTAGTAAATT GTCCTCTAGG TCTTTTCTGT GTCTGTTTTT AAATTACTTT ATCAGTGAGA
  CCGAGAATAT TATTTTATAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47021722	NES10868569	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31152990					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47021722	NES10868569	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144366816 () rs orientation: forward

Symbol	Name	Function Class
Rr586700	regulatory region 586700	446 bp proximal
Rr586701	regulatory region 586701	1142 bp proximal