rs31152988 SNP Detail

Summary

• ID
  rs31152988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144366811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGGAAG AGGAAGGAGA
  AGGAGGAGGA GGAGAAGAAA TAAAGAGAAG AAGGAGAAGA AGGAGAAGGA GAAGGAGGAG
  GAGGAGGAGG AGGAGGAGGA GGAGGAGGAG GAGGAGGAGA AGAAGAAGAA GAAGAAGAAG
  AAGAAGAAGA AGAAGAAGAA GAAGAAGAAG AAAGGCTCTG AGTACTTTGT TCTTTCTCTT
  Y
  CCAGAGTGCC CGACTTGTCT CTCTATGGTG GATCACTTTG ACTCTATAGA AGTGTGACTG
  TCCCTTCTTT CTCTCCTTTC CTAAACTCCT TATCCTGATT CTTAAAACAT GTTTATTCTC
  TAGTTCTAGT AAATTGTCCT CTAGGTCTTT TCTGTGTCTG TTTTTAAATT ACTTTATCAG
  TGAGACCGAG AATATTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47021720	NES10868568	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31152988					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47021720	NES10868568	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144366811 () rs orientation: forward

Symbol	Name	Function Class
Rr586700	regulatory region 586700	451 bp proximal
Rr586701	regulatory region 586701	1147 bp proximal