rs31152121 SNP Detail

Summary

• ID
  rs31152121
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:95679833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACACACC GAGCCAGCAC
  TGAGCAAGAG TCTAGACACA CACGGAAGAG GGAAGCAGTT TAGTAAGGGG ATGGGGGCTC
  AGAGAGGCTG AAAGCCACAG AACTAATCAA CAGGGCAGAA AGACACAAAC CTGTTCCCTG
  TGCCTTCCAT CAACACTAAA CAGACCTGTC CTAGAACCCA ATGGCTTTCC CTGCATTATT
  Y
  CGTGGACAGC ACCGATGTCT CAGTGACTGT CCCCAATGCC CCTTCTCCCC GCTGCAGTCT
  GGGAGCATTG CTGCATGTTA AGCTGTGCCC ACCACATGCC TGTCAGGACA CCACACCTTC
  TCCTCGGCTC TTTCCTCTTC AACTGCTCCT ACACCTTTTT CTTCCATTCC AGAGGTCTCA
  CTTTCGTGTT CATTATTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48021257	NES11896779	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31152121					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48021257	NES11896779	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:95679833 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr635030	regulatory region 635030			1642 bp distal
Rr635031	regulatory region 635031			662 bp distal
Rr635032	regulatory region 635032			311 bp distal
Suclg2	succinate-Coenzyme A ligase, GDP-forming, beta subunit			Intron
				Noncoding-Transcript-Variant