rs31152115 SNP Detail

Summary

• ID
  rs31152115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:95679376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGAAGCCACA GAACTGATCC TGGAAAGTCC CCTGCCCCTG
  CCAGGAGAGA GCTTACTTCA GCTTAGTCTC CACATCTGGC TGCCGTTGTT TGTTTATATG
  Y
  CTCTGTGGGA AAACACGCTC TTGGCACATG CACTTTGTCT CTGCACACTT TACTCACGTG
  ACACTTAACC TTCAGAGCAT AAGCTGTCAA ACGTTCTGAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48021251	NES11896770	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31152115					SNP	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48021251	NES11896770	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:95679376 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr635030	regulatory region 635030			1185 bp distal
Rr635031	regulatory region 635031			205 bp distal
Rr635032	regulatory region 635032			within coordinates
Suclg2	succinate-Coenzyme A ligase, GDP-forming, beta subunit			Intron
				Noncoding-Transcript-Variant