rs31151830 SNP Detail

Summary

• ID
  rs31151830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144389098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACAAGTT GTCCTCTTAC
  ATCCACATGC ATGTGTCATG GCATACATAT TTCTTCATGT GTGCACACAT GCAATTAAGT
  GTAAAGAGAG AGACTGGGCT GCTGAGCTGG AAACAAGACC TGGCTCTGCT GCCTTCTCTC
  AGAATGGCTC ACGACTCTCT TATCTGCAAA GCAGGGGCAG ACATGCCTTT CTGTTGGGCT
  Y
  AAGGAAGATA GTGTTCATTA ACTGTAGGCC AAATGTTAGG AGTACCGTGT GTTATCAGTA
  TTTTCGAAGG GAATCCTGAA GGCCCTGAAT CCACAGGATG CCGTGCCACT GTTCATAAAG
  GCTCATTAGA ACCACTACCA AGTCAGCATG GTGTGTGTCC AGTTCCTCTG AGGGGAGGGC
  TGGGTCCGGG TCCGTCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47021940	NES10867351	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31151830					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47021940	NES10867351	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144389098 () rs orientation: forward

Symbol	Name	Function Class
Rr586705	regulatory region 586705	1445 bp distal
Rr586706	regulatory region 586706	922 bp distal
Rr586707	regulatory region 586707	within coordinates
Rr586708	regulatory region 586708	977 bp proximal
Sh3glb1	SH3-domain GRB2-like B1 (endophilin)	341 bp downstream