rs31150838 SNP Detail

Summary

• ID
  rs31150838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151897841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACTATCC ACATCTTGCT
  TCTTGTAATT ACTCACTCAC TTTGTAAGAA CTTGACACTG TGGATTTGCA CGAATTACAA
  CCACAGGCAG CAGCATGCTT GGGACTGACC CAAAATTAAA GCAGGAGGAA AAGGGCCCAC
  CACTGCTCTG AGTTGTCGGT TTAGTTTGCT TAATGCATGG CCCTGTTTGA AGGACTTCTA
  R
  TTAGGGAAAT CTGGTGTTTA AATGCTATAA ACAAGGGGAA AACAGTATGT TTCCATAGCC
  ACCGTGACTT AAAAGACATT AGGGGAAGAA TAATGCAAAA GAACTTTAGT CTGTTTTAAC
  ACTTGAAAAC CCCAGAACTC ACGTGAACTA ATGCATGGTT GCCGCTGCTG CTGACTGACA
  ATTTCAAACT CCTACTTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45503982	mCV22364086	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss136101303	ENSMUSSNP2633669	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss321028366	CHEV_3_151855168	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31150838					SNP	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151897841 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13944	CpG island 13944			1497 bp proximal
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			1769 bp upstream
Gm64624	predicted gene, 64624			125 bp upstream
Rr587481	regulatory region 587481			663 bp distal
Rr587482	regulatory region 587482			357 bp distal
Rr587483	regulatory region 587483			within coordinates
Rr587484	regulatory region 587484			1631 bp proximal
Tssr36163	transcription start site region 36163			1519 bp downstream
Tssr36164	transcription start site region 36164			1543 bp downstream
Tssr36165	transcription start site region 36165			1569 bp downstream
Tssr36166	transcription start site region 36166			1599 bp downstream
Tssr36167	transcription start site region 36167			1629 bp downstream