rs31150804 SNP Detail

Summary

• ID
  rs31150804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60411041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA TCGTTAGTCT TGTATTTGAT
  Y
  TGTTTATGGA GACAAAAAGG TCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45504831	mCV22694965	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss135219291	ENSMUSSNP3138530	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss320786516	CHEV_3_60307542	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31150804					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60411041 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13210	CpG island 13210			1695 bp distal
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577411	regulatory region 577411			100 bp distal
Rr577412	regulatory region 577412			1159 bp proximal
Tssr887	transcription start site region 887			1740 bp downstream
Tssr29283	transcription start site region 29283			1712 bp downstream
Tssr29284	transcription start site region 29284			1620 bp downstream
Tssr29285	transcription start site region 29285			1341 bp downstream
Tssr29286	transcription start site region 29286			1414 bp upstream
Tssr33421	transcription start site region 33421			1859 bp upstream
Tssr33422	transcription start site region 33422			1786 bp upstream