rs31148173 SNP Detail

Summary

• ID
  rs31148173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130054784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACTGCAGT ACTCTTCATG TTCAGCTATG GCAAAAGAGA
  ACAAGTTATC CTGTAGTGTT ACCTGAACTG CTCAAGAGAT CGCAGCACGG GAAGCCTGCT
  R
  ACTGCTGTTT TCTCTGAAAC TCAGGAGGAG ACTTAAAAAT TCCACAGTGC AGTGTTTGGC
  AGAGTCAGAA GATCTGCAGC AGTGGCGATG GGGCTAGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45504420	mCV22994987	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		A
ss51632414	NES14653457	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A		G	A	G	A	G	G	G	G	G
ss135893357	ENSMUSSNP4526578	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31148173					SNP	G	G	G	G	G	G	A	G	G	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51632414	NES14653457	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130054784 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Rr585149	regulatory region 585149	1241 bp distal
Rr585150	regulatory region 585150	428 bp distal