rs31148091 SNP Detail

Summary

• ID
  rs31148091
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104961193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTAC ATATAAGAAC TCAAGTATTT
  R
  AGTGCACAAG TAACATATTA CGCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45503569	mCV23788073	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss135572949	ENSMUSSNP3948215	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320861380	CHEV_3_104856795	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31148091					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104961193 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	634 bp distal
Cttnbp2nl	CTTNBP2 N-terminal like	731 bp upstream
Rr367520	regulatory region 367520	727 bp downstream
Rr582659	regulatory region 582659	937 bp distal
Rr582660	regulatory region 582660	241 bp distal
Rr582661	regulatory region 582661	663 bp proximal
Tssr34913	transcription start site region 34913	1303 bp upstream
Tssr34914	transcription start site region 34914	1160 bp upstream
Tssr34915	transcription start site region 34915	939 bp upstream
Tssr34916	transcription start site region 34916	890 bp upstream
Tssr34917	transcription start site region 34917	726 bp upstream
Tssr34918	transcription start site region 34918	999 bp downstream