rs31147547 SNP Detail

Summary

• ID
  rs31147547
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95494519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA GTCTCACCGA GCGTGGTGGC
  K
  CACGCCTTTA ATCCCAGCAC TTGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45503643	mCV23591602	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31147547					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95494519 () rs orientation: forward

Symbol	Name	Function Class
Gm40097	predicted gene, 40097	within coordinates
Gm42671	predicted gene 42671	1763 bp upstream
Golph3l	golgi phosphoprotein 3-like	1761 bp upstream
Hormad1	HORMA domain containing 1	Intron
Rr397841	regulatory region 397841	1385 bp upstream
Rr580975	regulatory region 580975	733 bp proximal
Rr580976	regulatory region 580976	1051 bp proximal
Rr580977	regulatory region 580977	1594 bp proximal
Rr580978	regulatory region 580978	1600 bp proximal
Rr580979	regulatory region 580979	1793 bp proximal
Tssr30603	transcription start site region 30603	1720 bp upstream
Tssr30604	transcription start site region 30604	1752 bp upstream
Tssr30605	transcription start site region 30605	1783 bp upstream
Tssr30606	transcription start site region 30606	1827 bp upstream