rs31147191 SNP Detail

Summary

• ID
  rs31147191
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57754074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG AGTGACTTGG AGAAGTGTTA
  Y
  CCCCCTCCAG CGACTCCCCA GATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45504794	mCV22719346	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135204813	ENSMUSSNP6031548	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320781805	CHEV_3_57650575	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31147191					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57754074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13199	CpG island 13199	183 bp proximal
Gm66316	predicted gene, 66316	1274 bp upstream
Pfn2	profilin 2	Intron
Rr577167	regulatory region 577167	786 bp distal
Rr577168	regulatory region 577168	285 bp distal
Rr577169	regulatory region 577169	482 bp proximal
Rr577170	regulatory region 577170	1416 bp proximal
Rr577171	regulatory region 577171	1461 bp proximal
Tssr33340	transcription start site region 33340	825 bp downstream
Tssr33341	transcription start site region 33341	1037 bp downstream
Tssr33342	transcription start site region 33342	1071 bp downstream
Tssr33343	transcription start site region 33343	1427 bp downstream