rs31145020 SNP Detail

Summary

• ID
  rs31145020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144368154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATCAGAA GCAGTTCCGG
  AAAGATCACA AAGACATGAA CAGAACCTGG CCCCATGCTT TAGACACTGA GCATCTAAGA
  GACCAGACAG AAAAGCAGAT GACAGGACAA GGGGGTAACT ACTTTAATCT GCCTCAGAAC
  GACGGTTTGT GCATGATACT GGAAGCAGGC AAGAACAGTC AGTGTGGGCT TGACCCAAGG
  R
  TATTTGACTT TTCCTCCTAA AGAGCCACAC CCATTTCAGT TCTTATCTGC GGGTCGGGTC
  CTGTCCTCTC CACTACGTGA ACGGACACAC TGGGCCTGCA GACTGTTGAA TGGAACTGTA
  GCCAAAGTGT CAGGACCACA GCCTGGGCTC TGGCAGCTAG TCCTTACTGT TTGAGGAGAT
  GGTCTGCTTC TTGGGAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J
ss47021730	NES10868527	PERLEGEN	MM_PANEL2	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J
rs31145020					SNP	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47021730	NES10868527	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144368154 () rs orientation: forward

Symbol	Name	Function Class
Rr586700	regulatory region 586700	650 bp distal
Rr586701	regulatory region 586701	within coordinates
Rr586702	regulatory region 586702	909 bp proximal