rs31144918 SNP Detail

Summary

• ID
  rs31144918
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78866103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTA TCATTACTTG TACTCCACAC
  Y
  ATCAAACAGC TTCCTGTTCA TTGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45503612	mCV24564159	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss47028391	NES10759325	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		T	T	T		C	T	C		C
ss135365498	ENSMUSSNP4717162	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320809379	CHEV_3_78762718	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31144918					SNP	C	T	T	T	T	T	C	T	T	T	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47028391	NES10759325	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78866103 () rs orientation: forward

Symbol	Name	Function Class
Gm65474	predicted gene, 65474	within coordinates
Rr578449	regulatory region 578449	127 bp distal
Rr578450	regulatory region 578450	60 bp proximal
Rr578451	regulatory region 578451	194 bp proximal