rs31143837 SNP Detail

Summary

• ID
  rs31143837
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129474370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAACAAAG CCAGATCAAC TTTCATCAAT AAGAACACTC
  CCTCCAGGCC ACGGAACCTG TTTGGGGAGA GCTATTTCCA TCCCCGGGGG AGCTACACTC
  R
  AAGCAACGAC TGAGAACCAA CACTAGGGAT AGCCTGCAGT CCTAAGCAGC TCAGGGGCTA
  AGAGAAGAGG AGATGCAATC AAATGTGTTT CTCTCGTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45503900	mCV25348960	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss135887671	ENSMUSSNP5697912	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31143837					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129474370 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585059	regulatory region 585059			474 bp distal
Rr585060	regulatory region 585060			within coordinates
Rr585061	regulatory region 585061			723 bp proximal
Rr585062	regulatory region 585062			1115 bp proximal
Rr585063	regulatory region 585063			1726 bp proximal