rs31142824 SNP Detail

Summary

• ID
  rs31142824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41895941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTATTTTAT TTATTTTTAT TAGATATTTT CTTTATATAC
  ATTTCAAATG CTATCCCGAA AGTTCTCTAT ACCCTCCCCC ACCCCGCCCT GTTCCCCTAC
  Y
  CACCCATTCC CGTTTCTTGG CCCTGGCATT CCCCTGTACT GGGGCATATA AAGTTTGCAA
  TACCAAGGGG CCTCTCTTCC TAATGATGGC CGACTAGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45502644	mCV22956773	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss135046221	ENSMUSSNP3346020	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320730081	CHEV_3_41745428	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31142824					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41895941 () rs orientation: forward

Symbol	Name	Function Class
Rr576007	regulatory region 576007	1318 bp distal
Rr576008	regulatory region 576008	1437 bp proximal