rs31142154 SNP Detail

Summary

• ID
  rs31142154
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55971111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCAGTGCC TCATTTAGTA GAAACATAAA CATCTAGATC
  AGATCACTTA CATAATACAA ATATGAGAAT ATTTATTAAA AAGCTCTTAA AATGCTAAGT
  M
  TAACTGCCAC AAAAGTAGCA GCATGGTATT TTGTAATACC TCCAGAAAGC ATTAGTGACA
  TAAGTGAATG TAAAAAATAT AGACATTTTG TTAGATAGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45503430	mCV24472729	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss135192255	ENSMUSSNP413995	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31142154					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55971111 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr577022	regulatory region 577022			1628 bp proximal